Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
TFF3Q07654 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 GGCT-203ENST00000409144 836 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 FXNP2-201ENST00000411625 547 ntBASIC13.35□□□□□ -0.27
TFF3Q07654 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.35□□□□□ -0.27
TFF3Q07654 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC13.35□□□□□ -0.27
TFF3Q07654 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 AC005730.2-201ENST00000564549 1184 ntBASIC13.35□□□□□ -0.27
TFF3Q07654 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.35□□□□□ -0.27
TFF3Q07654 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
TFF3Q07654 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
TFF3Q07654 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 HINT2P1-201ENST00000419438 481 ntBASIC13.34□□□□□ -0.27
TFF3Q07654 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.34□□□□□ -0.27
TFF3Q07654 SPTLC1P5-201ENST00000450718 252 ntBASIC13.34□□□□□ -0.27
TFF3Q07654 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.34□□□□□ -0.27
TFF3Q07654 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC13.34□□□□□ -0.27
TFF3Q07654 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.34□□□□□ -0.27
TFF3Q07654 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.34□□□□□ -0.27
TFF3Q07654 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 OR10B1P-201ENST00000601666 907 ntBASIC13.34□□□□□ -0.27
TFF3Q07654 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 AP001505.2-201ENST00000616815 443 ntBASIC13.34□□□□□ -0.27
TFF3Q07654 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.34□□□□□ -0.27
TFF3Q07654 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 SUPT20HL2-201ENST00000486479 2409 ntBASIC13.34□□□□□ -0.27
TFF3Q07654 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
TFF3Q07654 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC13.34□□□□□ -0.27
TFF3Q07654 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
TFF3Q07654 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
TFF3Q07654 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
TFF3Q07654 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
TFF3Q07654 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC13.33□□□□□ -0.27
TFF3Q07654 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
TFF3Q07654 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.33□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms