Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 AC020931.1-201ENST00000589622 1346 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 AC025594.1-201ENST00000469533 543 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 RN7SL564P-201ENST00000496309 250 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 NAA40-205ENST00000539656 577 ntTSL 4 BASIC9.06□□□□□ -0.96
HSPG2P98160 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 AL513523.2-202ENST00000427283 2040 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 MIR648-201ENST00000385046 94 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 RBPMSLP-201ENST00000433427 502 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 VENTXP4-201ENST00000449029 958 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC9.06□□□□□ -0.96
HSPG2P98160 AC005746.3-201ENST00000614751 393 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 AC067931.2-201ENST00000623655 2003 ntBASIC9.06□□□□□ -0.96
HSPG2P98160 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC9.06□□□□□ -0.96
HSPG2P98160 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC9.06□□□□□ -0.96
HSPG2P98160 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC9.06□□□□□ -0.96
HSPG2P98160 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 OR52M2P-201ENST00000414298 959 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 AC068831.5-201ENST00000557387 328 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 NAT9-219ENST00000582524 573 ntTSL 4 BASIC9.05□□□□□ -0.96
HSPG2P98160 ST5-261ENST00000626808 1071 ntTSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 PCDH8P1-201ENST00000428983 2773 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 AC019109.1-201ENST00000401725 1874 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 AC023090.2-201ENST00000625182 2110 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
HSPG2P98160 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC9.05□□□□□ -0.96
HSPG2P98160 SAA1-202ENST00000405158 675 ntAPPRIS P1 TSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 AL512599.1-201ENST00000430724 685 ntBASIC9.05□□□□□ -0.96
HSPG2P98160 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 BMF-206ENST00000558774 671 ntTSL 3 BASIC9.05□□□□□ -0.96
HSPG2P98160 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC9.05□□□□□ -0.96
HSPG2P98160 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC9.05□□□□□ -0.96
HSPG2P98160 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC9.05□□□□□ -0.96
HSPG2P98160 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC9.05□□□□□ -0.96
HSPG2P98160 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC9.05□□□□□ -0.96
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms