Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.44□□□□□ -0.1
LIM2P55344 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.44□□□□□ -0.1
LIM2P55344 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.44□□□□□ -0.1
LIM2P55344 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LIM2P55344 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
LIM2P55344 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LIM2P55344 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.43□□□□□ -0.1
LIM2P55344 AL139094.1-201ENST00000405549 1188 ntBASIC14.43□□□□□ -0.1
LIM2P55344 COX5BP8-201ENST00000416911 349 ntBASIC14.43□□□□□ -0.1
LIM2P55344 HLA-K-203ENST00000430151 1046 ntBASIC14.43□□□□□ -0.1
LIM2P55344 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.43□□□□□ -0.1
LIM2P55344 ACTG1P3-201ENST00000431775 1114 ntBASIC14.43□□□□□ -0.1
LIM2P55344 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.43□□□□□ -0.1
LIM2P55344 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
LIM2P55344 AC009486.1-201ENST00000569860 813 ntBASIC14.43□□□□□ -0.1
LIM2P55344 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.43□□□□□ -0.1
LIM2P55344 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LIM2P55344 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
LIM2P55344 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.43□□□□□ -0.1
LIM2P55344 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.43□□□□□ -0.1
LIM2P55344 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.42□□□□□ -0.1
LIM2P55344 KLF2P2-201ENST00000416807 1039 ntBASIC14.42□□□□□ -0.1
LIM2P55344 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.42□□□□□ -0.1
LIM2P55344 NME2P1-201ENST00000426182 414 ntBASIC14.42□□□□□ -0.1
LIM2P55344 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.42□□□□□ -0.1
LIM2P55344 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LIM2P55344 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms