Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGCS2P54868 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGCS2P54868 AC006058.4-201ENST00000624016 1670 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
HMGCS2P54868 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGCS2P54868 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGCS2P54868 AC116345.2-201ENST00000512837 523 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 AC090857.1-201ENST00000527400 390 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 AC009779.1-201ENST00000551138 283 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
HMGCS2P54868 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.37■□□□□ 0.37
HMGCS2P54868 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGCS2P54868 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 AL008718.2-201ENST00000609206 1313 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 AC006480.2-201ENST00000609770 1337 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 AC020916.1-201ENST00000587762 1774 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 PCDHA1-201ENST00000378133 2726 ntBASIC17.37■□□□□ 0.37
HMGCS2P54868 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGCS2P54868 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
HMGCS2P54868 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HMGCS2P54868 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGCS2P54868 AC069218.1-201ENST00000435269 762 ntBASIC17.36■□□□□ 0.37
HMGCS2P54868 LDHBP1-201ENST00000455730 1119 ntBASIC17.36■□□□□ 0.37
HMGCS2P54868 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGCS2P54868 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
HMGCS2P54868 RTN3P1-201ENST00000536295 711 ntBASIC17.36■□□□□ 0.37
HMGCS2P54868 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGCS2P54868 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 AC012044.1-201ENST00000603431 297 ntBASIC17.36■□□□□ 0.37
HMGCS2P54868 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGCS2P54868 NAP1L6-202ENST00000641404 1222 ntBASIC17.36■□□□□ 0.37
HMGCS2P54868 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 API5-202ENST00000420461 2009 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
HMGCS2P54868 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGCS2P54868 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
HMGCS2P54868 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGCS2P54868 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGCS2P54868 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGCS2P54868 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
HMGCS2P54868 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGCS2P54868 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGCS2P54868 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGCS2P54868 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms