Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC14.95□□□□□ -0.02
CXCL12P48061 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.95□□□□□ -0.02
CXCL12P48061 MIR3677-201ENST00000578964 60 ntBASIC14.95□□□□□ -0.02
CXCL12P48061 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.95□□□□□ -0.02
CXCL12P48061 AC005632.3-201ENST00000605544 308 ntBASIC14.95□□□□□ -0.02
CXCL12P48061 AL157813.1-201ENST00000612996 587 ntBASIC14.95□□□□□ -0.02
CXCL12P48061 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.95□□□□□ -0.02
CXCL12P48061 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 AC006449.5-201ENST00000610658 2098 ntBASIC14.95□□□□□ -0.02
CXCL12P48061 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CXCL12P48061 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.95□□□□□ -0.02
CXCL12P48061 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.95□□□□□ -0.02
CXCL12P48061 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC14.95□□□□□ -0.02
CXCL12P48061 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CXCL12P48061 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 AD000864.1-201ENST00000624076 2295 ntBASIC14.94□□□□□ -0.02
CXCL12P48061 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CXCL12P48061 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC14.94□□□□□ -0.02
CXCL12P48061 NAGK-204ENST00000443872 878 ntTSL 3 BASIC14.94□□□□□ -0.02
CXCL12P48061 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC14.94□□□□□ -0.02
CXCL12P48061 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 AC027601.3-201ENST00000622907 509 ntBASIC14.94□□□□□ -0.02
CXCL12P48061 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CXCL12P48061 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CXCL12P48061 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.94□□□□□ -0.02
CXCL12P48061 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.93□□□□□ -0.02
CXCL12P48061 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC14.93□□□□□ -0.02
CXCL12P48061 AC007881.3-201ENST00000608897 607 ntBASIC14.93□□□□□ -0.02
CXCL12P48061 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.93□□□□□ -0.02
CXCL12P48061 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CXCL12P48061 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms