Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 INE1-201ENST00000456273 945 ntBASIC15.77■□□□□ 0.12
PTPN9P43378 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.77■□□□□ 0.12
PTPN9P43378 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC15.77■□□□□ 0.12
PTPN9P43378 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.12
PTPN9P43378 AC015936.2-201ENST00000593177 259 ntBASIC15.77■□□□□ 0.12
PTPN9P43378 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.77■□□□□ 0.12
PTPN9P43378 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
PTPN9P43378 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.77■□□□□ 0.12
PTPN9P43378 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN9P43378 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.77■□□□□ 0.11
PTPN9P43378 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.77■□□□□ 0.11
PTPN9P43378 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
PTPN9P43378 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.11
PTPN9P43378 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
PTPN9P43378 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
PTPN9P43378 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 COX5BP8-201ENST00000416911 349 ntBASIC15.76■□□□□ 0.11
PTPN9P43378 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.76■□□□□ 0.11
PTPN9P43378 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.76■□□□□ 0.11
PTPN9P43378 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.76■□□□□ 0.11
PTPN9P43378 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 AP001889.1-201ENST00000525414 633 ntBASIC15.76■□□□□ 0.11
PTPN9P43378 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.76■□□□□ 0.11
PTPN9P43378 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.76■□□□□ 0.11
PTPN9P43378 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.76■□□□□ 0.11
PTPN9P43378 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
PTPN9P43378 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC15.76■□□□□ 0.11
PTPN9P43378 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTPN9P43378 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 AC067930.6-201ENST00000623257 4947 ntBASIC15.75■□□□□ 0.11
PTPN9P43378 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.75■□□□□ 0.11
PTPN9P43378 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.75■□□□□ 0.11
PTPN9P43378 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTPN9P43378 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms