Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC17.72■□□□□ 0.43
COL4A5P29400 AC073592.2-201ENST00000623062 780 ntBASIC17.72■□□□□ 0.43
COL4A5P29400 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
COL4A5P29400 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
COL4A5P29400 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A5P29400 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A5P29400 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 BAK1P1-201ENST00000317045 636 ntBASIC17.71■□□□□ 0.43
COL4A5P29400 JTB-202ENST00000356648 1040 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A5P29400 RN7SKP109-201ENST00000410592 316 ntBASIC17.71■□□□□ 0.43
COL4A5P29400 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC17.71■□□□□ 0.43
COL4A5P29400 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.71■□□□□ 0.43
COL4A5P29400 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC17.71■□□□□ 0.43
COL4A5P29400 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A5P29400 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL4A5P29400 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A5P29400 KRT17P5-201ENST00000332088 839 ntBASIC17.71■□□□□ 0.42
COL4A5P29400 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A5P29400 HCG27-204ENST00000424675 895 ntTSL 3 BASIC17.71■□□□□ 0.42
COL4A5P29400 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.71■□□□□ 0.42
COL4A5P29400 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC17.71■□□□□ 0.42
COL4A5P29400 AP003392.6-201ENST00000607709 325 ntBASIC17.71■□□□□ 0.42
COL4A5P29400 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL4A5P29400 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 RNF165-205ENST00000588679 2904 ntBASIC17.7■□□□□ 0.42
COL4A5P29400 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A5P29400 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A5P29400 THY1-209ENST00000580275 578 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A5P29400 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL4A5P29400 AC002044.2-201ENST00000624910 970 ntBASIC17.7■□□□□ 0.42
COL4A5P29400 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A5P29400 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A5P29400 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A5P29400 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 AC023024.2-201ENST00000623561 1993 ntBASIC17.7■□□□□ 0.42
COL4A5P29400 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A5P29400 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A5P29400 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A5P29400 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL4A5P29400 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL4A5P29400 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A5P29400 COX20P1-201ENST00000366529 357 ntBASIC17.69■□□□□ 0.42
COL4A5P29400 MIR645-201ENST00000385283 94 ntBASIC17.69■□□□□ 0.42
COL4A5P29400 AC024293.1-201ENST00000467930 498 ntBASIC17.69■□□□□ 0.42
COL4A5P29400 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
COL4A5P29400 MIR2392-201ENST00000584881 84 ntBASIC17.69■□□□□ 0.42
COL4A5P29400 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms