Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
MSH3P20585 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.18■□□□□ 0.02
MSH3P20585 AC104457.1-201ENST00000401024 814 ntBASIC15.18■□□□□ 0.02
MSH3P20585 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.18■□□□□ 0.02
MSH3P20585 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.18■□□□□ 0.02
MSH3P20585 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
MSH3P20585 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 AC005225.4-201ENST00000557330 545 ntBASIC15.18■□□□□ 0.02
MSH3P20585 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.18■□□□□ 0.02
MSH3P20585 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.18■□□□□ 0.02
MSH3P20585 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 WASH3P-207ENST00000560956 1394 ntBASIC15.18■□□□□ 0.02
MSH3P20585 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
MSH3P20585 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
MSH3P20585 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.18■□□□□ 0.02
MSH3P20585 AC093525.8-201ENST00000624099 1342 ntBASIC15.17■□□□□ 0.02
MSH3P20585 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 AL645937.2-201ENST00000396808 931 ntBASIC15.17■□□□□ 0.02
MSH3P20585 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
MSH3P20585 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 KRT17P7-201ENST00000451704 1104 ntBASIC15.17■□□□□ 0.02
MSH3P20585 INE1-201ENST00000456273 945 ntBASIC15.17■□□□□ 0.02
MSH3P20585 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.17■□□□□ 0.02
MSH3P20585 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
MSH3P20585 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 AP001063.1-201ENST00000568332 529 ntBASIC15.17■□□□□ 0.02
MSH3P20585 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.17■□□□□ 0.02
MSH3P20585 AC009486.1-201ENST00000569860 813 ntBASIC15.17■□□□□ 0.02
MSH3P20585 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.17■□□□□ 0.02
MSH3P20585 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 AC005252.2-201ENST00000624630 1141 ntBASIC15.17■□□□□ 0.02
MSH3P20585 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
MSH3P20585 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
MSH3P20585 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms