Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.57■□□□□ 0.4
LIG1P18858 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG1P18858 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LIG1P18858 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG1P18858 AC004840.1-201ENST00000636359 365 ntBASIC17.57■□□□□ 0.4
LIG1P18858 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG1P18858 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.57■□□□□ 0.4
LIG1P18858 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG1P18858 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.57■□□□□ 0.4
LIG1P18858 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG1P18858 AC018442.1-201ENST00000421439 2061 ntBASIC17.57■□□□□ 0.4
LIG1P18858 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.57■□□□□ 0.4
LIG1P18858 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.57■□□□□ 0.4
LIG1P18858 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.57■□□□□ 0.4
LIG1P18858 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIG1P18858 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 SLED1-202ENST00000512051 380 ntBASIC17.56■□□□□ 0.4
LIG1P18858 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.56■□□□□ 0.4
LIG1P18858 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.56■□□□□ 0.4
LIG1P18858 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC17.56■□□□□ 0.4
LIG1P18858 AF228730.6-201ENST00000641497 218 ntBASIC17.56■□□□□ 0.4
LIG1P18858 AC084121.3-201ENST00000641716 218 ntBASIC17.56■□□□□ 0.4
LIG1P18858 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.56■□□□□ 0.4
LIG1P18858 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
LIG1P18858 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIG1P18858 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIG1P18858 AC006504.5-208ENST00000588784 2401 ntBASIC17.56■□□□□ 0.4
LIG1P18858 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LIG1P18858 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIG1P18858 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.55■□□□□ 0.4
LIG1P18858 AC104794.3-201ENST00000566840 1248 ntBASIC17.55■□□□□ 0.4
LIG1P18858 AC138761.1-201ENST00000584393 385 ntBASIC17.55■□□□□ 0.4
LIG1P18858 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 AC025181.2-201ENST00000606994 802 ntBASIC17.55■□□□□ 0.4
LIG1P18858 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.55■□□□□ 0.4
LIG1P18858 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 AC008761.3-201ENST00000624803 892 ntBASIC17.55■□□□□ 0.4
LIG1P18858 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.55■□□□□ 0.4
LIG1P18858 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIG1P18858 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms