Protein–RNA interactions for Protein: O60481

ZIC3, Zinc finger protein ZIC 3, humanhuman

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC3O60481 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.65□□□□□ -0.22
ZIC3O60481 AC138466.3-201ENST00000619983 221 ntBASIC13.65□□□□□ -0.22
ZIC3O60481 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
ZIC3O60481 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
ZIC3O60481 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
ZIC3O60481 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
ZIC3O60481 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.65□□□□□ -0.22
ZIC3O60481 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.65□□□□□ -0.22
ZIC3O60481 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
ZIC3O60481 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
ZIC3O60481 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.23
ZIC3O60481 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.65□□□□□ -0.23
ZIC3O60481 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
ZIC3O60481 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.64□□□□□ -0.23
ZIC3O60481 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 AC023090.2-201ENST00000625182 2110 ntBASIC13.64□□□□□ -0.23
ZIC3O60481 TCAF2P1-201ENST00000291129 2421 ntBASIC13.64□□□□□ -0.23
ZIC3O60481 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 AC144831.1-201ENST00000573312 2656 ntBASIC13.64□□□□□ -0.23
ZIC3O60481 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
ZIC3O60481 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
ZIC3O60481 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 AC023310.1-201ENST00000554836 735 ntBASIC13.64□□□□□ -0.23
ZIC3O60481 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.64□□□□□ -0.23
ZIC3O60481 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
ZIC3O60481 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ZIC3O60481 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
ZIC3O60481 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.64□□□□□ -0.23
ZIC3O60481 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
ZIC3O60481 LINC00528-201ENST00000600723 2160 ntBASIC13.64□□□□□ -0.23
ZIC3O60481 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.63□□□□□ -0.23
ZIC3O60481 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.63□□□□□ -0.23
ZIC3O60481 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC13.63□□□□□ -0.23
ZIC3O60481 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.63□□□□□ -0.23
ZIC3O60481 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.63□□□□□ -0.23
ZIC3O60481 FAM8A4P-201ENST00000435433 1213 ntBASIC13.63□□□□□ -0.23
ZIC3O60481 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
ZIC3O60481 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.63□□□□□ -0.23
ZIC3O60481 FTLP10-202ENST00000505798 471 ntBASIC13.63□□□□□ -0.23
ZIC3O60481 RNA5SP412-201ENST00000516234 123 ntBASIC13.63□□□□□ -0.23
ZIC3O60481 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.63□□□□□ -0.23
ZIC3O60481 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.63□□□□□ -0.23
ZIC3O60481 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms