Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC17■□□□□ 0.31
MSH4O15457 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17■□□□□ 0.31
MSH4O15457 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 DBET-201ENST00000630918 3363 ntBASIC17■□□□□ 0.31
MSH4O15457 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MSH4O15457 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MSH4O15457 AJ011931.1-201ENST00000618749 2492 ntBASIC16.99■□□□□ 0.31
MSH4O15457 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH4O15457 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
MSH4O15457 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 FTLP10-202ENST00000505798 471 ntBASIC16.99■□□□□ 0.31
MSH4O15457 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC16.99■□□□□ 0.31
MSH4O15457 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 AL583810.1-201ENST00000553344 1045 ntBASIC16.99■□□□□ 0.31
MSH4O15457 AC023310.1-201ENST00000554836 735 ntBASIC16.99■□□□□ 0.31
MSH4O15457 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.99■□□□□ 0.31
MSH4O15457 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 C2orf69P2-201ENST00000562032 1123 ntBASIC16.99■□□□□ 0.31
MSH4O15457 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.99■□□□□ 0.31
MSH4O15457 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
MSH4O15457 OR10B1P-201ENST00000601666 907 ntBASIC16.99■□□□□ 0.31
MSH4O15457 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.99■□□□□ 0.31
MSH4O15457 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.99■□□□□ 0.31
MSH4O15457 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.99■□□□□ 0.31
MSH4O15457 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
MSH4O15457 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MSH4O15457 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSH4O15457 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH4O15457 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
MSH4O15457 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
MSH4O15457 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 RN7SKP230-201ENST00000365642 335 ntBASIC16.98■□□□□ 0.31
MSH4O15457 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH4O15457 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH4O15457 RNA5SP412-201ENST00000516234 123 ntBASIC16.98■□□□□ 0.31
MSH4O15457 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.98■□□□□ 0.31
MSH4O15457 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.98■□□□□ 0.31
MSH4O15457 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
MSH4O15457 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.98■□□□□ 0.31
MSH4O15457 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSH4O15457 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms