Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SLC28A1O00337 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SLC28A1O00337 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SLC28A1O00337 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.69□□□□□ -0.06
SLC28A1O00337 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SLC28A1O00337 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SLC28A1O00337 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SLC28A1O00337 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SLC28A1O00337 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.68□□□□□ -0.06
SLC28A1O00337 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.68□□□□□ -0.06
SLC28A1O00337 IGHV3-42-201ENST00000520410 361 ntBASIC14.68□□□□□ -0.06
SLC28A1O00337 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.68□□□□□ -0.06
SLC28A1O00337 AL691403.2-201ENST00000618460 490 ntBASIC14.68□□□□□ -0.06
SLC28A1O00337 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SLC28A1O00337 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SLC28A1O00337 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SLC28A1O00337 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SLC28A1O00337 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SLC28A1O00337 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.67□□□□□ -0.06
SLC28A1O00337 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 MIR943-201ENST00000401286 94 ntBASIC14.67□□□□□ -0.06
SLC28A1O00337 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.67□□□□□ -0.06
SLC28A1O00337 AC009477.1-201ENST00000452936 217 ntBASIC14.67□□□□□ -0.06
SLC28A1O00337 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.67□□□□□ -0.06
SLC28A1O00337 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.67□□□□□ -0.06
SLC28A1O00337 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.67□□□□□ -0.06
SLC28A1O00337 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
SLC28A1O00337 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
SLC28A1O00337 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SLC28A1O00337 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.66□□□□□ -0.06
SLC28A1O00337 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.66□□□□□ -0.06
SLC28A1O00337 BX640514.1-201ENST00000583223 1918 ntBASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms