Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 LINC00528-201ENST00000600723 2160 ntBASIC19.05■□□□□ 0.64
SCN11AQ9UI33 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 TSPY25P-201ENST00000429463 745 ntBASIC19.05■□□□□ 0.64
SCN11AQ9UI33 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 MIR6727-201ENST00000620702 65 ntBASIC19.05■□□□□ 0.64
SCN11AQ9UI33 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SCN11AQ9UI33 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC139712.1-201ENST00000378256 1875 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 RPSAP31-201ENST00000416648 895 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 GAS5-209ENST00000430245 723 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 FTH1P22-201ENST00000456305 520 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 LY6E-208ENST00000520531 490 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 F10-203ENST00000409306 1450 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 FAM90A2P-201ENST00000511144 1395 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 FAM90A25P-201ENST00000528404 1395 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 KRT18P9-201ENST00000604826 1300 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 JTB-202ENST00000356648 1040 ntTSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 MIR557-201ENST00000385239 98 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC098935.1-201ENST00000446057 611 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC104784.1-201ENST00000473096 294 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 PGAM1P5-201ENST00000548011 764 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 AC242376.2-201ENST00000619355 883 ntBASIC19.04■□□□□ 0.64
SCN11AQ9UI33 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SCN11AQ9UI33 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SCN11AQ9UI33 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms