Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 CICP20-201ENST00000443330 2801 ntBASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC39Q9UFE4 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 AC107890.1-201ENST00000422478 521 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 FAM86GP-201ENST00000448322 971 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 TEX28P1-201ENST00000613479 1221 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 AL138828.2-201ENST00000615812 383 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 TEX28P2-201ENST00000617764 1221 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC39Q9UFE4 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 APP-205ENST00000358918 2366 ntTSL 5 BASIC17.71■□□□□ 0.42
CCDC39Q9UFE4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AC051619.7-201ENST00000568314 623 ntBASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 CICP17-201ENST00000418553 2377 ntBASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms