Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 AL157414.3-201ENST00000624276 1954 ntBASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VPS29Q9UBQ0 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AC092183.1-201ENST00000469884 875 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 RNA5SP421-201ENST00000516864 134 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AC093813.1-201ENST00000605066 256 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AC004790.1-201ENST00000612686 536 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AL662799.1-202ENST00000614205 422 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AC140479.7-201ENST00000636301 2332 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AL158070.2-201ENST00000623713 1621 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 AL136379.1-201ENST00000623471 2642 ntBASIC14.62□□□□□ -0.07
VPS29Q9UBQ0 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 INTS4P1-203ENST00000641008 3683 ntBASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 PMS2P2-201ENST00000425039 1128 ntBASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 VDAC1P7-201ENST00000462417 847 ntBASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VPS29Q9UBQ0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms