Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 AC093433.1-201ENST00000458048 571 ntBASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 RN7SL752P-201ENST00000463779 287 ntBASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 AP005019.2-201ENST00000615104 511 ntBASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SMC4Q9NTJ3 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 LINC01101-201ENST00000622953 1884 ntBASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC19.52■□□□□ 0.71
SMC4Q9NTJ3 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AC098614.1-201ENST00000368528 745 ntBASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AL596325.1-201ENST00000563991 1082 ntBASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AC010319.3-201ENST00000597028 470 ntBASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMC4Q9NTJ3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 USP35-204ENST00000530267 2419 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 AC114812.1-204ENST00000449669 728 ntBASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 RN7SL837P-201ENST00000463010 287 ntBASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 MIR5189-201ENST00000577370 114 ntBASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMC4Q9NTJ3 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.49■□□□□ 0.71
SMC4Q9NTJ3 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms