Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL844908.2-201ENST00000609461 460 ntBASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC073592.8-201ENST00000624126 511 ntBASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC097359.2-201ENST00000604992 2389 ntBASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 AC018529.2-202ENST00000611482 3087 ntBASIC15.62■□□□□ 0.09
TRIM56Q9BRZ2 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 AC007292.2-201ENST00000593524 1812 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 GHSR-202ENST00000427970 912 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 KLF2P3-201ENST00000451977 1087 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 RN7SL618P-201ENST00000477850 296 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 ST20-AS1-201ENST00000560255 4223 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 INTS4P1-203ENST00000641008 3683 ntBASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRIM56Q9BRZ2 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 TREML5P-201ENST00000421694 576 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 CNN2P2-201ENST00000443536 909 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 CNN2P3-201ENST00000450201 906 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AC027369.6-201ENST00000525520 931 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AC004449.1-201ENST00000564240 433 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 AL136317.3-201ENST00000618497 906 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 WASH3P-207ENST00000560956 1394 ntBASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRIM56Q9BRZ2 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms