Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SUMO3P55854 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SUMO3P55854 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SUMO3P55854 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SUMO3P55854 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 TLE1P1-201ENST00000422965 589 ntBASIC13.76□□□□□ -0.21
SUMO3P55854 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.76□□□□□ -0.21
SUMO3P55854 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 AL022328.1-201ENST00000610050 478 ntBASIC13.76□□□□□ -0.21
SUMO3P55854 AC012645.4-201ENST00000610691 1061 ntBASIC13.76□□□□□ -0.21
SUMO3P55854 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SUMO3P55854 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC13.76□□□□□ -0.21
SUMO3P55854 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
SUMO3P55854 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SUMO3P55854 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.76□□□□□ -0.21
SUMO3P55854 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SUMO3P55854 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
SUMO3P55854 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.75□□□□□ -0.21
SUMO3P55854 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.75□□□□□ -0.21
SUMO3P55854 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.75□□□□□ -0.21
SUMO3P55854 AC245100.3-201ENST00000441281 285 ntBASIC13.75□□□□□ -0.21
SUMO3P55854 AC026434.2-201ENST00000506094 1078 ntBASIC13.75□□□□□ -0.21
SUMO3P55854 USP32P1-208ENST00000506594 1164 ntBASIC13.75□□□□□ -0.21
SUMO3P55854 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC13.75□□□□□ -0.21
SUMO3P55854 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.75□□□□□ -0.21
SUMO3P55854 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
SUMO3P55854 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.75□□□□□ -0.21
SUMO3P55854 AC008735.3-201ENST00000596646 500 ntBASIC13.75□□□□□ -0.21
SUMO3P55854 AC145423.3-201ENST00000615987 467 ntBASIC13.75□□□□□ -0.21
SUMO3P55854 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.75□□□□□ -0.21
SUMO3P55854 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC13.75□□□□□ -0.21
SUMO3P55854 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
SUMO3P55854 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms