Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC036164.1-201ENST00000570544 333 ntBASIC16.35■□□□□ 0.21
VCPP55072 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 MIR5572-201ENST00000583188 137 ntBASIC16.35■□□□□ 0.21
VCPP55072 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
VCPP55072 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.35■□□□□ 0.21
VCPP55072 AC097359.3-201ENST00000603982 1210 ntBASIC16.35■□□□□ 0.21
VCPP55072 AC244669.2-201ENST00000612320 853 ntBASIC16.35■□□□□ 0.21
VCPP55072 AL158212.4-201ENST00000624062 1286 ntBASIC16.35■□□□□ 0.21
VCPP55072 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 AC126365.1-201ENST00000578585 1514 ntBASIC16.35■□□□□ 0.21
VCPP55072 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.34■□□□□ 0.21
VCPP55072 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 AC079316.1-201ENST00000548397 411 ntBASIC16.34■□□□□ 0.21
VCPP55072 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 DUX4L45-201ENST00000566406 1057 ntBASIC16.34■□□□□ 0.21
VCPP55072 FADS2-215ENST00000574708 385 ntTSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.34■□□□□ 0.21
VCPP55072 AL391069.4-201ENST00000609583 481 ntBASIC16.34■□□□□ 0.21
VCPP55072 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.34■□□□□ 0.21
VCPP55072 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VCPP55072 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 LINC02228-204ENST00000642115 2962 ntBASIC16.34■□□□□ 0.21
VCPP55072 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 AL607033.1-201ENST00000623900 1599 ntBASIC16.34■□□□□ 0.21
VCPP55072 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.34■□□□□ 0.21
VCPP55072 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.34■□□□□ 0.21
VCPP55072 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
VCPP55072 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
VCPP55072 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.21
VCPP55072 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
VCPP55072 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VCPP55072 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 TPO-206ENST00000382269 1155 ntTSL 5 BASIC16.33■□□□□ 0.2
VCPP55072 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VCPP55072 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.33■□□□□ 0.2
VCPP55072 UPF3AP2-201ENST00000457924 1132 ntBASIC16.33■□□□□ 0.2
VCPP55072 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
VCPP55072 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.33■□□□□ 0.2
VCPP55072 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms