Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.13■□□□□ 0.17
LIG3P49916 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.13■□□□□ 0.17
LIG3P49916 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.13■□□□□ 0.17
LIG3P49916 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.13■□□□□ 0.17
LIG3P49916 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 MIR4745-201ENST00000577608 62 ntBASIC16.13■□□□□ 0.17
LIG3P49916 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.13■□□□□ 0.17
LIG3P49916 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 AL136982.4-201ENST00000437689 1740 ntBASIC16.13■□□□□ 0.17
LIG3P49916 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC16.13■□□□□ 0.17
LIG3P49916 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIG3P49916 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.13■□□□□ 0.17
LIG3P49916 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 CR383656.2-201ENST00000548656 2254 ntBASIC16.12■□□□□ 0.17
LIG3P49916 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LIG3P49916 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 AC090616.6-203ENST00000579186 1945 ntBASIC16.12■□□□□ 0.17
LIG3P49916 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.12■□□□□ 0.17
LIG3P49916 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LIG3P49916 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
LIG3P49916 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 SPDYE17-201ENST00000412399 783 ntBASIC16.12■□□□□ 0.17
LIG3P49916 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.12■□□□□ 0.17
LIG3P49916 TSPY16P-201ENST00000449843 468 ntBASIC16.12■□□□□ 0.17
LIG3P49916 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.12■□□□□ 0.17
LIG3P49916 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.12■□□□□ 0.17
LIG3P49916 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.12■□□□□ 0.17
LIG3P49916 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC16.12■□□□□ 0.17
LIG3P49916 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LIG3P49916 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
LIG3P49916 AC087499.5-201ENST00000452760 1342 ntBASIC16.12■□□□□ 0.17
LIG3P49916 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.12■□□□□ 0.17
LIG3P49916 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
LIG3P49916 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIG3P49916 AC136759.1-202ENST00000530858 2194 ntBASIC16.11■□□□□ 0.17
LIG3P49916 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
LIG3P49916 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.11■□□□□ 0.17
LIG3P49916 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LIG3P49916 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms