Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 AC006486.2-201ENST00000624246 2199 ntBASIC16.05■□□□□ 0.16
LHX1P48742 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.05■□□□□ 0.16
LHX1P48742 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.05■□□□□ 0.16
LHX1P48742 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.05■□□□□ 0.16
LHX1P48742 HOMER2P2-201ENST00000451621 847 ntBASIC16.05■□□□□ 0.16
LHX1P48742 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.05■□□□□ 0.16
LHX1P48742 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 COX5BP1-201ENST00000507622 393 ntBASIC16.05■□□□□ 0.16
LHX1P48742 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.05■□□□□ 0.16
LHX1P48742 AC106820.3-201ENST00000561653 397 ntBASIC16.05■□□□□ 0.16
LHX1P48742 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.05■□□□□ 0.16
LHX1P48742 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 RN7SL713P-201ENST00000582127 302 ntBASIC16.05■□□□□ 0.16
LHX1P48742 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.05■□□□□ 0.16
LHX1P48742 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 OR10B1P-201ENST00000601666 907 ntBASIC16.05■□□□□ 0.16
LHX1P48742 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.05■□□□□ 0.16
LHX1P48742 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.05■□□□□ 0.16
LHX1P48742 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.05■□□□□ 0.16
LHX1P48742 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LHX1P48742 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AC013268.4-201ENST00000637413 2228 ntBASIC16.04■□□□□ 0.16
LHX1P48742 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.04■□□□□ 0.16
LHX1P48742 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 FKBP4P6-201ENST00000457486 1332 ntBASIC16.04■□□□□ 0.16
LHX1P48742 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LHX1P48742 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 CNN2P10-201ENST00000443067 918 ntBASIC16.04■□□□□ 0.16
LHX1P48742 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AL391280.1-201ENST00000506969 1062 ntBASIC16.04■□□□□ 0.16
LHX1P48742 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.04■□□□□ 0.16
LHX1P48742 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.04■□□□□ 0.16
LHX1P48742 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.04■□□□□ 0.16
LHX1P48742 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.04■□□□□ 0.16
LHX1P48742 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 RN7SL560P-201ENST00000577943 264 ntBASIC16.04■□□□□ 0.16
LHX1P48742 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.04■□□□□ 0.16
LHX1P48742 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.04■□□□□ 0.16
LHX1P48742 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LHX1P48742 ZBED1P1-201ENST00000502364 1930 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms