Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RFX3P48380 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.41□□□□□ -0.1
RFX3P48380 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.41□□□□□ -0.1
RFX3P48380 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.4□□□□□ -0.1
RFX3P48380 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
RFX3P48380 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.4□□□□□ -0.1
RFX3P48380 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 AL133267.1-201ENST00000398220 340 ntBASIC14.4□□□□□ -0.1
RFX3P48380 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 MEIS3P1-201ENST00000495167 958 ntBASIC14.4□□□□□ -0.1
RFX3P48380 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.4□□□□□ -0.1
RFX3P48380 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.4□□□□□ -0.1
RFX3P48380 AL355385.1-201ENST00000606123 409 ntBASIC14.4□□□□□ -0.1
RFX3P48380 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.4□□□□□ -0.1
RFX3P48380 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.4□□□□□ -0.1
RFX3P48380 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
RFX3P48380 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
RFX3P48380 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
RFX3P48380 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RFX3P48380 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
RFX3P48380 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.4□□□□□ -0.11
RFX3P48380 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
RFX3P48380 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
RFX3P48380 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.39□□□□□ -0.11
RFX3P48380 AC138969.3-201ENST00000546612 1459 ntBASIC14.39□□□□□ -0.11
RFX3P48380 AC138932.2-201ENST00000548268 1459 ntBASIC14.39□□□□□ -0.11
RFX3P48380 AC126755.4-201ENST00000549796 1459 ntBASIC14.39□□□□□ -0.11
RFX3P48380 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 AL158212.4-201ENST00000624062 1286 ntBASIC14.39□□□□□ -0.11
RFX3P48380 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
RFX3P48380 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 AC015656.1-201ENST00000624209 3578 ntBASIC14.39□□□□□ -0.11
RFX3P48380 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
RFX3P48380 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RFX3P48380 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.39□□□□□ -0.11
RFX3P48380 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms