Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
SOX3P41225 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 AC005912.2-201ENST00000619492 2400 ntBASIC14.41□□□□□ -0.1
SOX3P41225 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SOX3P41225 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SOX3P41225 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SOX3P41225 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
SOX3P41225 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.4□□□□□ -0.1
SOX3P41225 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.4□□□□□ -0.1
SOX3P41225 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.4□□□□□ -0.1
SOX3P41225 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.4□□□□□ -0.1
SOX3P41225 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.4□□□□□ -0.1
SOX3P41225 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 AL390755.1-201ENST00000623716 2027 ntBASIC14.4□□□□□ -0.1
SOX3P41225 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SOX3P41225 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SOX3P41225 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SOX3P41225 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
SOX3P41225 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.39□□□□□ -0.11
SOX3P41225 AL133267.1-201ENST00000398220 340 ntBASIC14.39□□□□□ -0.11
SOX3P41225 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
SOX3P41225 AL512384.1-201ENST00000406683 331 ntBASIC14.39□□□□□ -0.11
SOX3P41225 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 AL442647.2-201ENST00000429864 857 ntBASIC14.39□□□□□ -0.11
SOX3P41225 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.39□□□□□ -0.11
SOX3P41225 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.39□□□□□ -0.11
SOX3P41225 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC14.39□□□□□ -0.11
SOX3P41225 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SOX3P41225 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms