Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HOXC9P31274 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 AC078875.1-201ENST00000431907 724 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 AL645933.1-201ENST00000440087 609 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 AL353637.1-201ENST00000451571 732 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.87■□□□□ 0.77
HOXC9P31274 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 AC090857.1-201ENST00000527400 390 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.87■□□□□ 0.77
HOXC9P31274 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HOXC9P31274 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HOXC9P31274 AC009884.2-201ENST00000603110 324 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 AC012044.1-201ENST00000603431 297 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC9P31274 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 OR6D1P-203ENST00000641209 4860 ntBASIC19.87■□□□□ 0.77
HOXC9P31274 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.87■□□□□ 0.77
HOXC9P31274 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HOXC9P31274 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HOXC9P31274 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC9P31274 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
HOXC9P31274 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC9P31274 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXC9P31274 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC9P31274 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXC9P31274 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXC9P31274 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXC9P31274 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC9P31274 AC027601.3-201ENST00000622907 509 ntBASIC19.86■□□□□ 0.77
HOXC9P31274 AC006453.1-201ENST00000636037 1257 ntBASIC19.86■□□□□ 0.77
HOXC9P31274 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC9P31274 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC9P31274 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC9P31274 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.86■□□□□ 0.77
HOXC9P31274 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC9P31274 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 AC013726.1-201ENST00000563747 2285 ntBASIC19.86■□□□□ 0.77
HOXC9P31274 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC9P31274 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
HOXC9P31274 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 AC006480.2-201ENST00000609770 1337 ntBASIC19.85■□□□□ 0.77
HOXC9P31274 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC9P31274 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC9P31274 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 AC069218.1-201ENST00000435269 762 ntBASIC19.85■□□□□ 0.77
HOXC9P31274 VPS18-202ENST00000558474 873 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC9P31274 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
HOXC9P31274 AC008894.3-201ENST00000624324 3103 ntBASIC19.85■□□□□ 0.77
HOXC9P31274 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 AC007292.2-201ENST00000593524 1812 ntBASIC19.85■□□□□ 0.77
HOXC9P31274 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
HOXC9P31274 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC9P31274 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms