Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC02084-201ENST00000606069 1096 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SPDYE12P-201ENST00000618416 771 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 NIN-202ENST00000324330 4364 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 Z97205.2-201ENST00000564697 1639 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC018529.2-202ENST00000611482 3087 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 HNRNPA1P40-201ENST00000426371 1278 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 GHSR-202ENST00000427970 912 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 INO80C-206ENST00000586489 594 ntTSL 3 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AL390955.2-201ENST00000603032 514 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC025181.2-201ENST00000606994 802 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 AL390754.1-201ENST00000619088 582 ntBASIC11.68□□□□□ -0.54
HLA-DMBP28068 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 TP73-209ENST00000603362 1668 ntTSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HLA-DMBP28068 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
HLA-DMBP28068 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
HLA-DMBP28068 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms