Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.8□□□□□ -0.04
TNFP01375 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.8□□□□□ -0.04
TNFP01375 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 AL136309.1-201ENST00000403917 691 ntBASIC14.8□□□□□ -0.04
TNFP01375 TISP43-201ENST00000409793 538 ntTSL 4 BASIC14.8□□□□□ -0.04
TNFP01375 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.8□□□□□ -0.04
TNFP01375 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 APOA2-204ENST00000464492 530 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.8□□□□□ -0.04
TNFP01375 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 DIO1-215ENST00000610607 796 ntTSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 AL096828.3-201ENST00000615354 462 ntBASIC14.8□□□□□ -0.04
TNFP01375 AL008638.5-201ENST00000623814 1298 ntBASIC14.8□□□□□ -0.04
TNFP01375 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 GRN-222ENST00000639447 1314 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
TNFP01375 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 AC126755.1-201ENST00000525846 6405 ntBASIC14.8□□□□□ -0.04
TNFP01375 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TNFP01375 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TNFP01375 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.79□□□□□ -0.04
TNFP01375 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
TNFP01375 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 MIR663B-201ENST00000408361 115 ntBASIC14.79□□□□□ -0.04
TNFP01375 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.79□□□□□ -0.04
TNFP01375 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.79□□□□□ -0.04
TNFP01375 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.79□□□□□ -0.04
TNFP01375 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.79□□□□□ -0.04
TNFP01375 AP003171.2-201ENST00000528208 925 ntBASIC14.79□□□□□ -0.04
TNFP01375 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.79□□□□□ -0.04
TNFP01375 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 AC126365.1-201ENST00000578585 1514 ntBASIC14.79□□□□□ -0.04
TNFP01375 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 AL359258.3-201ENST00000622910 2331 ntBASIC14.79□□□□□ -0.04
TNFP01375 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
TNFP01375 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
TNFP01375 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms