Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC15.25■□□□□ 0.03
SHOX2O60902 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC15.25■□□□□ 0.03
SHOX2O60902 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 HIST2H3DP1-201ENST00000401004 416 ntBASIC15.25■□□□□ 0.03
SHOX2O60902 CXCL1P1-201ENST00000502804 216 ntBASIC15.25■□□□□ 0.03
SHOX2O60902 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.25■□□□□ 0.03
SHOX2O60902 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.25■□□□□ 0.03
SHOX2O60902 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.25■□□□□ 0.03
SHOX2O60902 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.25■□□□□ 0.03
SHOX2O60902 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.25■□□□□ 0.03
SHOX2O60902 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC15.25■□□□□ 0.03
SHOX2O60902 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
SHOX2O60902 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
SHOX2O60902 AP000437.1-201ENST00000624057 2085 ntBASIC15.24■□□□□ 0.03
SHOX2O60902 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 AGAP10P-201ENST00000454844 2418 ntBASIC15.24■□□□□ 0.03
SHOX2O60902 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.24■□□□□ 0.03
SHOX2O60902 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC15.24■□□□□ 0.03
SHOX2O60902 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.24■□□□□ 0.03
SHOX2O60902 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.24■□□□□ 0.03
SHOX2O60902 AC136632.2-201ENST00000512891 861 ntBASIC15.24■□□□□ 0.03
SHOX2O60902 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.24■□□□□ 0.03
SHOX2O60902 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.24■□□□□ 0.03
SHOX2O60902 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 SBF1P1-201ENST00000444527 5631 ntBASIC15.24■□□□□ 0.03
SHOX2O60902 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.24■□□□□ 0.03
SHOX2O60902 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SHOX2O60902 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.24■□□□□ 0.03
SHOX2O60902 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SHOX2O60902 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms