Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AC004890.2-204ENST00000481968 304 ntBASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ARL16-202ENST00000570561 768 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 SRD5A3P1-201ENST00000603021 949 ntBASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AL390754.1-201ENST00000619088 582 ntBASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 AL009178.2-201ENST00000597278 2719 ntBASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 LILRP1-201ENST00000444199 1370 ntBASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
HIF3AQ9Y2N7 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC055876.3-201ENST00000431496 288 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 SPDYE18-201ENST00000510091 1050 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 FTH1-202ENST00000526640 786 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC008738.7-201ENST00000609744 511 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC138649.4-201ENST00000612222 287 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC139530.3-201ENST00000620344 690 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AC004840.1-201ENST00000636359 365 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AL136379.1-201ENST00000623471 2642 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 AL360270.3-201ENST00000609118 1348 ntBASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.79□□□□□ -0.2
HIF3AQ9Y2N7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms