Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SLC25A1P1-201ENST00000528351 927 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 KRT8P23-201ENST00000560090 1207 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AC092902.6-201ENST00000641783 218 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 AC006504.5-208ENST00000588784 2401 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CHMP1AQ9HD42 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 USP47-202ENST00000339865 7775 ntTSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 COG6-202ENST00000416691 5257 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PTMS-202ENST00000389462 773 ntTSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AC243562.1-201ENST00000560672 389 ntBASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AC106730.1-201ENST00000566722 1090 ntBASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CHMP1AQ9HD42 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 AC140479.7-201ENST00000636301 2332 ntBASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 YBX2P1-201ENST00000394192 760 ntBASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.23□□□□□ -0.29
CHMP1AQ9HD42 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms