Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 MIR1202-201ENST00000408529 83 ntBASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 AC026434.2-201ENST00000506094 1078 ntBASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ECM1P1-201ENST00000604092 1279 ntBASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ZACNP1-201ENST00000612259 710 ntBASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 AP000845.1-201ENST00000581677 2131 ntBASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
CHMP4AQ9BY43 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AP000593.2-201ENST00000542775 1433 ntBASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AL157414.3-201ENST00000624276 1954 ntBASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 HOMER2P2-201ENST00000451621 847 ntBASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 AC063926.3-201ENST00000624734 5658 ntBASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
CHMP4AQ9BY43 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 AL355994.2-201ENST00000447882 704 ntBASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 C2orf69P2-201ENST00000562032 1123 ntBASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 RN7SL713P-201ENST00000582127 302 ntBASIC19.35■□□□□ 0.69
CHMP4AQ9BY43 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms