Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC055811.4-201ENST00000624039 1754 ntBASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AL450487.1-201ENST00000426799 995 ntBASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AL592309.1-201ENST00000443127 649 ntBASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 TIMM8BP1-201ENST00000452384 211 ntBASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CCDC28BQ9BUN5 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 LILRP1-201ENST00000444199 1370 ntBASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms