Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC12.99□□□□□ -0.33
COL12A1Q99715 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 AC092862.1-201ENST00000541534 533 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC12.99□□□□□ -0.33
COL12A1Q99715 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 AL138725.1-201ENST00000407347 1314 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 RBPMSLP-201ENST00000433427 502 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 AC012441.2-201ENST00000444843 739 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
COL12A1Q99715 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
COL12A1Q99715 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 AP006248.1-201ENST00000610471 67 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 AC004466.2-201ENST00000614749 516 ntBASIC12.99□□□□□ -0.33
COL12A1Q99715 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
COL12A1Q99715 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 CFL1P6-201ENST00000400899 494 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 RN7SL173P-201ENST00000461853 292 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC12.98□□□□□ -0.33
COL12A1Q99715 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC12.98□□□□□ -0.33
COL12A1Q99715 AC120498.5-201ENST00000561757 299 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 AHCYP3-201ENST00000420053 1279 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 AL512306.1-201ENST00000432698 848 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 SLC25A15P1-201ENST00000456738 342 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 SLC25A15P3-201ENST00000505530 290 ntBASIC12.98□□□□□ -0.33
COL12A1Q99715 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC12.98□□□□□ -0.33
COL12A1Q99715 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 USB1-205ENST00000561743 1135 ntTSL 3 BASIC12.98□□□□□ -0.33
COL12A1Q99715 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
COL12A1Q99715 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.98□□□□□ -0.33
COL12A1Q99715 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
COL12A1Q99715 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.97□□□□□ -0.33
COL12A1Q99715 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC12.97□□□□□ -0.33
COL12A1Q99715 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 HNRNPA1P25-201ENST00000422644 937 ntBASIC12.97□□□□□ -0.33
COL12A1Q99715 MAGEA7P-201ENST00000436482 942 ntBASIC12.97□□□□□ -0.33
COL12A1Q99715 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 AC004066.1-201ENST00000502488 802 ntBASIC12.97□□□□□ -0.33
COL12A1Q99715 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC12.97□□□□□ -0.33
COL12A1Q99715 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.97□□□□□ -0.33
COL12A1Q99715 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 AC026471.1-201ENST00000564629 3026 ntBASIC12.97□□□□□ -0.33
COL12A1Q99715 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
COL12A1Q99715 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms