Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 AP001094.4-201ENST00000579008 2176 ntBASIC17.89■□□□□ 0.45
SMC1BQ8NDV3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 STK16-203ENST00000409516 895 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 KLF2P1-201ENST00000447438 1042 ntBASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 DUTP3-201ENST00000450025 415 ntBASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AP000911.2-201ENST00000534330 502 ntBASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AC009884.2-201ENST00000603110 324 ntBASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 USP4-203ENST00000415188 1454 ntTSL 3 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.88■□□□□ 0.45
SMC1BQ8NDV3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 AC004522.1-201ENST00000419978 654 ntBASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 ORAOV1P1-201ENST00000503108 395 ntBASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 AL139339.2-201ENST00000608063 657 ntBASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 AC244394.1-201ENST00000435000 1665 ntBASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
SMC1BQ8NDV3 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.86■□□□□ 0.45
SMC1BQ8NDV3 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms