Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.6■□□□□ 0.25
VPS52Q8N1B4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 MIR3615-201ENST00000581999 87 ntBASIC16.6■□□□□ 0.25
VPS52Q8N1B4 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 AP005019.2-201ENST00000615104 511 ntBASIC16.6■□□□□ 0.25
VPS52Q8N1B4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS52Q8N1B4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 KRT18P25-201ENST00000508931 1278 ntBASIC16.59■□□□□ 0.25
VPS52Q8N1B4 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.59■□□□□ 0.25
VPS52Q8N1B4 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS52Q8N1B4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 AP003680.1-201ENST00000598970 3660 ntBASIC16.58■□□□□ 0.25
VPS52Q8N1B4 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.58■□□□□ 0.25
VPS52Q8N1B4 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 MIR1247-201ENST00000408206 136 ntBASIC16.58■□□□□ 0.24
VPS52Q8N1B4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 FAM197Y7-201ENST00000432892 766 ntBASIC16.58■□□□□ 0.24
VPS52Q8N1B4 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 GAPDHP40-201ENST00000505218 1006 ntBASIC16.58■□□□□ 0.24
VPS52Q8N1B4 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC16.58■□□□□ 0.24
VPS52Q8N1B4 AC145423.3-201ENST00000615987 467 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms