Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.37■□□□□ 0.21
VCPP55072 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.37■□□□□ 0.21
VCPP55072 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
VCPP55072 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
VCPP55072 BTBD6P1-201ENST00000412176 1267 ntBASIC16.37■□□□□ 0.21
VCPP55072 NUS1P3-201ENST00000423502 862 ntBASIC16.37■□□□□ 0.21
VCPP55072 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.37■□□□□ 0.21
VCPP55072 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.37■□□□□ 0.21
VCPP55072 AC253536.4-201ENST00000440539 267 ntBASIC16.37■□□□□ 0.21
VCPP55072 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.37■□□□□ 0.21
VCPP55072 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
VCPP55072 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.37■□□□□ 0.21
VCPP55072 HNRNPUP1-201ENST00000554987 333 ntBASIC16.37■□□□□ 0.21
VCPP55072 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.37■□□□□ 0.21
VCPP55072 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
VCPP55072 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
VCPP55072 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.37■□□□□ 0.21
VCPP55072 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VCPP55072 AC068587.6-202ENST00000641839 5619 ntBASIC16.37■□□□□ 0.21
VCPP55072 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.37■□□□□ 0.21
VCPP55072 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.36■□□□□ 0.21
VCPP55072 AC126755.1-201ENST00000525846 6405 ntBASIC16.36■□□□□ 0.21
VCPP55072 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 TCAF2P1-201ENST00000291129 2421 ntBASIC16.36■□□□□ 0.21
VCPP55072 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
VCPP55072 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VCPP55072 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.36■□□□□ 0.21
VCPP55072 RPL13P2-201ENST00000440687 659 ntBASIC16.36■□□□□ 0.21
VCPP55072 AC104306.2-201ENST00000451877 341 ntBASIC16.36■□□□□ 0.21
VCPP55072 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.36■□□□□ 0.21
VCPP55072 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 PTP4A1P2-201ENST00000546033 454 ntBASIC16.36■□□□□ 0.21
VCPP55072 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.36■□□□□ 0.21
VCPP55072 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
VCPP55072 AL359711.2-201ENST00000563105 872 ntBASIC16.36■□□□□ 0.21
VCPP55072 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.36■□□□□ 0.21
VCPP55072 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.36■□□□□ 0.21
VCPP55072 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.36■□□□□ 0.21
VCPP55072 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VCPP55072 AC091951.1-201ENST00000512854 2465 ntBASIC16.36■□□□□ 0.21
VCPP55072 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VCPP55072 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC16.36■□□□□ 0.21
VCPP55072 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 AC099063.4-201ENST00000641099 1602 ntBASIC16.35■□□□□ 0.21
VCPP55072 NORAD-201ENST00000565493 5339 ntBASIC16.35■□□□□ 0.21
VCPP55072 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
VCPP55072 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VCPP55072 AL355864.2-201ENST00000447420 863 ntBASIC16.35■□□□□ 0.21
VCPP55072 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.35■□□□□ 0.21
VCPP55072 EIF4HP1-201ENST00000453115 687 ntBASIC16.35■□□□□ 0.21
VCPP55072 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.35■□□□□ 0.21
VCPP55072 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.35■□□□□ 0.21
VCPP55072 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms