Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.55■□□□□ 0.4
CTCFP49711 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
CTCFP49711 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.55■□□□□ 0.4
CTCFP49711 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.55■□□□□ 0.4
CTCFP49711 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC17.55■□□□□ 0.4
CTCFP49711 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CTCFP49711 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 ENPP7P8-202ENST00000527856 1345 ntBASIC17.54■□□□□ 0.4
CTCFP49711 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.54■□□□□ 0.4
CTCFP49711 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC17.54■□□□□ 0.4
CTCFP49711 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC17.54■□□□□ 0.4
CTCFP49711 TMCO5B-205ENST00000530020 894 ntBASIC17.54■□□□□ 0.4
CTCFP49711 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC17.54■□□□□ 0.4
CTCFP49711 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 PEBP1P2-201ENST00000603980 558 ntBASIC17.54■□□□□ 0.4
CTCFP49711 AC004686.1-201ENST00000605113 538 ntBASIC17.54■□□□□ 0.4
CTCFP49711 AL353622.2-201ENST00000605846 425 ntBASIC17.54■□□□□ 0.4
CTCFP49711 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.54■□□□□ 0.4
CTCFP49711 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.54■□□□□ 0.4
CTCFP49711 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CTCFP49711 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CTCFP49711 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 AL357563.1-201ENST00000404728 395 ntBASIC17.53■□□□□ 0.4
CTCFP49711 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 AC244197.1-201ENST00000456494 951 ntBASIC17.53■□□□□ 0.4
CTCFP49711 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.53■□□□□ 0.4
CTCFP49711 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 AC097359.3-201ENST00000603982 1210 ntBASIC17.53■□□□□ 0.4
CTCFP49711 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.53■□□□□ 0.4
CTCFP49711 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CTCFP49711 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CTCFP49711 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms