Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 AC004066.1-201ENST00000502488 802 ntBASIC14.85□□□□□ -0.03
HNF4AP41235 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 AC036164.1-201ENST00000570544 333 ntBASIC14.85□□□□□ -0.03
HNF4AP41235 SAMD11P1-201ENST00000571429 661 ntBASIC14.85□□□□□ -0.03
HNF4AP41235 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 REXO1L4P-201ENST00000605109 1937 ntBASIC14.85□□□□□ -0.03
HNF4AP41235 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
HNF4AP41235 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
HNF4AP41235 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.85□□□□□ -0.03
HNF4AP41235 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
HNF4AP41235 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.85□□□□□ -0.03
HNF4AP41235 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
HNF4AP41235 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 C8orf49-201ENST00000525043 1968 ntBASIC14.84□□□□□ -0.03
HNF4AP41235 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 MEP1AP4-201ENST00000423244 1087 ntBASIC14.84□□□□□ -0.03
HNF4AP41235 FAM207CP-201ENST00000443486 507 ntBASIC14.84□□□□□ -0.03
HNF4AP41235 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.84□□□□□ -0.03
HNF4AP41235 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.84□□□□□ -0.03
HNF4AP41235 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.84□□□□□ -0.03
HNF4AP41235 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
HNF4AP41235 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
HNF4AP41235 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms