Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A1P12109 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 AL592076.1-201ENST00000424448 303 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.62■□□□□ 0.25
COL6A1P12109 RPL18AP3-201ENST00000462885 528 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 NDUFS6P1-201ENST00000485187 316 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A1P12109 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC16.62■□□□□ 0.25
COL6A1P12109 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A1P12109 NAT9-220ENST00000582870 896 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A1P12109 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 AL161773.1-201ENST00000624845 863 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.62■□□□□ 0.25
COL6A1P12109 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.62■□□□□ 0.25
COL6A1P12109 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.62■□□□□ 0.25
COL6A1P12109 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
COL6A1P12109 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A1P12109 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
COL6A1P12109 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.61■□□□□ 0.25
COL6A1P12109 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.61■□□□□ 0.25
COL6A1P12109 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A1P12109 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
COL6A1P12109 AL157813.1-201ENST00000612996 587 ntBASIC16.61■□□□□ 0.25
COL6A1P12109 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.61■□□□□ 0.25
COL6A1P12109 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 CYP2T1P-202ENST00000641596 2535 ntBASIC16.61■□□□□ 0.25
COL6A1P12109 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 AC136759.1-202ENST00000530858 2194 ntBASIC16.61■□□□□ 0.25
COL6A1P12109 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
COL6A1P12109 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 TNRC18P3-201ENST00000441896 2691 ntBASIC16.61■□□□□ 0.25
COL6A1P12109 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A1P12109 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A1P12109 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
COL6A1P12109 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL6A1P12109 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A1P12109 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A1P12109 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A1P12109 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A1P12109 AC018463.1-201ENST00000456674 917 ntBASIC16.6■□□□□ 0.25
COL6A1P12109 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.6■□□□□ 0.25
COL6A1P12109 AL022344.2-201ENST00000568976 968 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms