Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
HOXC4P09017 AC091804.1-201ENST00000486888 567 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXC4P09017 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
HOXC4P09017 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXC4P09017 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXC4P09017 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXC4P09017 AL136301.1-201ENST00000615830 422 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 GPR182-203ENST00000622922 591 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.74□□□□□ -0.05
HOXC4P09017 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 AC105917.1-201ENST00000506637 2539 ntBASIC14.74□□□□□ -0.05
HOXC4P09017 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.74□□□□□ -0.05
HOXC4P09017 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.74□□□□□ -0.05
HOXC4P09017 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HOXC4P09017 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.74□□□□□ -0.05
HOXC4P09017 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.73□□□□□ -0.05
HOXC4P09017 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HOXC4P09017 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HOXC4P09017 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 SHC1P1-201ENST00000425230 1745 ntBASIC14.73□□□□□ -0.05
HOXC4P09017 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
HOXC4P09017 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 FAM58BP-201ENST00000439056 645 ntBASIC14.73□□□□□ -0.05
HOXC4P09017 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.73□□□□□ -0.05
HOXC4P09017 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 MIR3615-201ENST00000581999 87 ntBASIC14.73□□□□□ -0.05
HOXC4P09017 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 AC007663.3-201ENST00000609632 465 ntBASIC14.73□□□□□ -0.05
HOXC4P09017 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 PPT1-215ENST00000641471 2368 ntBASIC14.73□□□□□ -0.05
HOXC4P09017 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.73□□□□□ -0.05
HOXC4P09017 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.73□□□□□ -0.05
HOXC4P09017 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HOXC4P09017 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HOXC4P09017 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 AC018735.1-201ENST00000437208 1502 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HOXC4P09017 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
HOXC4P09017 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HOXC4P09017 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 CSH2-202ENST00000345366 598 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXC4P09017 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.72□□□□□ -0.05
HOXC4P09017 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXC4P09017 TUBB8P8-201ENST00000458717 1058 ntBASIC14.72□□□□□ -0.05
HOXC4P09017 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HOXC4P09017 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC14.72□□□□□ -0.05
HOXC4P09017 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC14.72□□□□□ -0.05
HOXC4P09017 AC131206.1-201ENST00000538078 1211 ntBASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms