Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
LDB3O75112 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 AL512384.1-201ENST00000406683 331 ntBASIC14.36□□□□□ -0.11
LDB3O75112 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LDB3O75112 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 IGHV3-72-202ENST00000621503 303 ntBASIC14.36□□□□□ -0.11
LDB3O75112 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
LDB3O75112 ZBED1P1-201ENST00000502364 1930 ntBASIC14.36□□□□□ -0.11
LDB3O75112 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.36□□□□□ -0.11
LDB3O75112 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.36□□□□□ -0.11
LDB3O75112 AL360270.3-201ENST00000609118 1348 ntBASIC14.36□□□□□ -0.11
LDB3O75112 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LDB3O75112 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LDB3O75112 TNRC18P2-201ENST00000417666 2714 ntBASIC14.35□□□□□ -0.11
LDB3O75112 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.35□□□□□ -0.11
LDB3O75112 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 AL645937.2-201ENST00000396808 931 ntBASIC14.35□□□□□ -0.11
LDB3O75112 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC14.35□□□□□ -0.11
LDB3O75112 TMEM14DP-201ENST00000422205 345 ntBASIC14.35□□□□□ -0.11
LDB3O75112 NUS1P3-201ENST00000423502 862 ntBASIC14.35□□□□□ -0.11
LDB3O75112 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.35□□□□□ -0.11
LDB3O75112 MIR5189-201ENST00000577370 114 ntBASIC14.35□□□□□ -0.11
LDB3O75112 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.35□□□□□ -0.11
LDB3O75112 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 AP005019.2-201ENST00000615104 511 ntBASIC14.35□□□□□ -0.11
LDB3O75112 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
LDB3O75112 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LDB3O75112 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
LDB3O75112 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC14.35□□□□□ -0.11
LDB3O75112 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms