Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.05■□□□□ 0.32
MSH4O15457 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
MSH4O15457 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH4O15457 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH4O15457 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH4O15457 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH4O15457 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.04■□□□□ 0.32
MSH4O15457 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 AP003171.2-201ENST00000528208 925 ntBASIC17.04■□□□□ 0.32
MSH4O15457 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH4O15457 AC079316.1-201ENST00000548397 411 ntBASIC17.04■□□□□ 0.32
MSH4O15457 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.04■□□□□ 0.32
MSH4O15457 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.04■□□□□ 0.32
MSH4O15457 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
MSH4O15457 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.04■□□□□ 0.32
MSH4O15457 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.04■□□□□ 0.32
MSH4O15457 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
MSH4O15457 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 AHCYP2-201ENST00000430630 1300 ntBASIC17.03■□□□□ 0.32
MSH4O15457 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
MSH4O15457 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
MSH4O15457 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 RPS2P32-201ENST00000439199 892 ntBASIC17.03■□□□□ 0.32
MSH4O15457 AC244107.1-201ENST00000442033 332 ntBASIC17.03■□□□□ 0.32
MSH4O15457 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.03■□□□□ 0.32
MSH4O15457 MESTP3-201ENST00000503460 968 ntBASIC17.03■□□□□ 0.32
MSH4O15457 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
MSH4O15457 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 AC138466.3-201ENST00000619983 221 ntBASIC17.03■□□□□ 0.32
MSH4O15457 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.03■□□□□ 0.32
MSH4O15457 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
MSH4O15457 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
MSH4O15457 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
MSH4O15457 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.02■□□□□ 0.32
MSH4O15457 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.02■□□□□ 0.32
MSH4O15457 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms