Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 FGD5P1-202ENST00000614866 2498 ntBASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 AP006294.1-201ENST00000415407 339 ntBASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 ENPP7P5-201ENST00000541031 1031 ntBASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 GSN-203ENST00000373808 2664 ntTSL 2 BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SMC4Q9NTJ3 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CICP23-201ENST00000605013 2741 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 AL139094.1-201ENST00000405549 1188 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 NUS1P3-201ENST00000423502 862 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 RPSAP52-203ENST00000622976 1023 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 AC013726.1-201ENST00000563747 2285 ntBASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.56■□□□□ 0.72
SMC4Q9NTJ3 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 KLF2P2-201ENST00000416807 1039 ntBASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 COQ6-210ENST00000554920 649 ntTSL 3 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SMC4Q9NTJ3 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms