Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AC074338.1-201ENST00000416825 156 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 SPCS2P1-201ENST00000561636 679 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 Z92544.3-201ENST00000624747 417 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 AC152010.1-201ENST00000415779 2006 ntBASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
AMBRA1Q9C0C7 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
AMBRA1Q9C0C7 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 AC051619.7-201ENST00000568314 623 ntBASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 AC107918.4-201ENST00000641966 3141 ntBASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
AMBRA1Q9C0C7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms