Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
CCDC28BQ9BUN5 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 FES-203ENST00000394302 2133 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AL591424.1-201ENST00000442569 1213 ntBASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AC069335.1-201ENST00000489972 472 ntBASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 AC025181.2-201ENST00000606994 802 ntBASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CCDC28BQ9BUN5 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 KRT8P12-202ENST00000472924 1397 ntBASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC074338.1-201ENST00000416825 156 ntBASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.89□□□□□ -0.03
CCDC28BQ9BUN5 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms