Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
PTCHD1Q96NR3 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 AC134312.5-201ENST00000568031 1313 ntBASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 STRN-202ENST00000379213 2254 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 BTNL10-201ENST00000595971 695 ntBASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 AC148477.4-201ENST00000613430 1793 ntBASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
PTCHD1Q96NR3 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AC091951.1-201ENST00000512854 2465 ntBASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 KRT18P25-201ENST00000508931 1278 ntBASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AP005019.2-201ENST00000615104 511 ntBASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
PTCHD1Q96NR3 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms