Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AC009093.7-201ENST00000623853 1223 ntBASIC16.53■□□□□ 0.24
CCDC42Q96M95 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AC027601.5-201ENST00000624065 2482 ntBASIC16.53■□□□□ 0.24
CCDC42Q96M95 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.53■□□□□ 0.24
CCDC42Q96M95 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CCDC42Q96M95 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 AL080243.2-201ENST00000418783 582 ntBASIC16.52■□□□□ 0.24
CCDC42Q96M95 SPDYE7P-202ENST00000420373 878 ntBASIC16.52■□□□□ 0.24
CCDC42Q96M95 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 RPL13P2-201ENST00000440687 659 ntBASIC16.52■□□□□ 0.24
CCDC42Q96M95 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 KRT18P43-201ENST00000469825 1281 ntBASIC16.52■□□□□ 0.24
CCDC42Q96M95 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC42Q96M95 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC42Q96M95 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CCDC42Q96M95 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC42Q96M95 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 AL121723.1-201ENST00000445194 1519 ntBASIC16.51■□□□□ 0.23
CCDC42Q96M95 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC42Q96M95 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
CCDC42Q96M95 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms