Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 PRSS30P-206ENST00000641773 873 ntBASIC17.41■□□□□ 0.38
ATL3Q6DD88 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
ATL3Q6DD88 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
ATL3Q6DD88 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.41■□□□□ 0.38
ATL3Q6DD88 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
ATL3Q6DD88 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 AC023090.2-201ENST00000625182 2110 ntBASIC17.41■□□□□ 0.38
ATL3Q6DD88 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.41■□□□□ 0.38
ATL3Q6DD88 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
ATL3Q6DD88 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 INTS4P1-203ENST00000641008 3683 ntBASIC17.4■□□□□ 0.38
ATL3Q6DD88 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 FAM86GP-201ENST00000448322 971 ntBASIC17.4■□□□□ 0.38
ATL3Q6DD88 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 RARRES2P5-201ENST00000564013 466 ntBASIC17.4■□□□□ 0.38
ATL3Q6DD88 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 AC136759.1-202ENST00000530858 2194 ntBASIC17.4■□□□□ 0.38
ATL3Q6DD88 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
ATL3Q6DD88 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ATL3Q6DD88 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
ATL3Q6DD88 AL137783.1-201ENST00000623494 1896 ntBASIC17.39■□□□□ 0.38
ATL3Q6DD88 AC097359.2-201ENST00000604992 2389 ntBASIC17.39■□□□□ 0.38
ATL3Q6DD88 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 AL354702.1-201ENST00000442006 1960 ntBASIC17.39■□□□□ 0.37
ATL3Q6DD88 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 TREML5P-201ENST00000421694 576 ntBASIC17.39■□□□□ 0.37
ATL3Q6DD88 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 AC036164.1-201ENST00000570544 333 ntBASIC17.39■□□□□ 0.37
ATL3Q6DD88 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 AC093813.1-201ENST00000605066 256 ntBASIC17.39■□□□□ 0.37
ATL3Q6DD88 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 AC027601.5-201ENST00000624065 2482 ntBASIC17.39■□□□□ 0.37
ATL3Q6DD88 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
ATL3Q6DD88 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.39■□□□□ 0.37
ATL3Q6DD88 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ATL3Q6DD88 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ATL3Q6DD88 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms