Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC104457.1-201ENST00000401024 814 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 CLUHP6-201ENST00000580789 941 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AL033527.5-201ENST00000641382 801 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 AP000845.1-201ENST00000581677 2131 ntBASIC18.44■□□□□ 0.54
VPS53Q5VIR6 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS53Q5VIR6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 CICP23-201ENST00000605013 2741 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 MSTO2P-201ENST00000314835 1709 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AP006294.1-201ENST00000415407 339 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 GHSR-202ENST00000427970 912 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 INE1-201ENST00000456273 945 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 RN7SL837P-201ENST00000463010 287 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AC132938.2-201ENST00000579188 680 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AC133539.2-201ENST00000604757 467 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AL591163.1-201ENST00000641757 987 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 REXO1L4P-201ENST00000605109 1937 ntBASIC18.43■□□□□ 0.54
VPS53Q5VIR6 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS53Q5VIR6 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 AC007787.1-201ENST00000588095 1583 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 RPL13AP25-201ENST00000484130 612 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 IGHV3-72-202ENST00000621503 303 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CU634019.7-201ENST00000624153 1185 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 FP236241.2-201ENST00000624906 1185 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms