Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 IGHEP1-201ENST00000521393 651 ntBASIC17.93■□□□□ 0.46
BRCA1P38398 TREHP1-201ENST00000531328 465 ntBASIC17.93■□□□□ 0.46
BRCA1P38398 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
BRCA1P38398 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC17.93■□□□□ 0.46
BRCA1P38398 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.93■□□□□ 0.46
BRCA1P38398 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.93■□□□□ 0.46
BRCA1P38398 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
BRCA1P38398 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
BRCA1P38398 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
BRCA1P38398 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 MIR1301-201ENST00000408518 82 ntBASIC17.92■□□□□ 0.46
BRCA1P38398 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 AP005212.2-201ENST00000584979 510 ntBASIC17.92■□□□□ 0.46
BRCA1P38398 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 AC105250.1-201ENST00000509378 2057 ntBASIC17.92■□□□□ 0.46
BRCA1P38398 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
BRCA1P38398 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.92■□□□□ 0.46
BRCA1P38398 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.92■□□□□ 0.46
BRCA1P38398 OR5BD1P-201ENST00000532527 817 ntBASIC17.92■□□□□ 0.46
BRCA1P38398 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC17.92■□□□□ 0.46
BRCA1P38398 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 CYP4F36P-201ENST00000589193 186 ntBASIC17.92■□□□□ 0.46
BRCA1P38398 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC17.92■□□□□ 0.46
BRCA1P38398 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.92■□□□□ 0.46
BRCA1P38398 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
BRCA1P38398 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC17.91■□□□□ 0.46
BRCA1P38398 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC17.91■□□□□ 0.46
BRCA1P38398 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.91■□□□□ 0.46
BRCA1P38398 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.91■□□□□ 0.46
BRCA1P38398 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 AP000845.1-201ENST00000581677 2131 ntBASIC17.91■□□□□ 0.46
BRCA1P38398 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
BRCA1P38398 AC008972.2-201ENST00000606587 494 ntBASIC17.91■□□□□ 0.46
BRCA1P38398 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.91■□□□□ 0.46
BRCA1P38398 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
BRCA1P38398 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.91■□□□□ 0.46
BRCA1P38398 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 RPL18AP8-201ENST00000486071 528 ntBASIC17.9■□□□□ 0.46
BRCA1P38398 AC122719.1-201ENST00000507989 559 ntTSL 4 BASIC17.9■□□□□ 0.46
BRCA1P38398 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 AC226150.1-201ENST00000544259 466 ntBASIC17.9■□□□□ 0.46
BRCA1P38398 MT2A-202ENST00000561491 581 ntTSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms