Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
USF1P22415 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
USF1P22415 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
USF1P22415 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC13.01□□□□□ -0.33
USF1P22415 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.01□□□□□ -0.33
USF1P22415 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 AC026410.3-201ENST00000514280 936 ntBASIC13.01□□□□□ -0.33
USF1P22415 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.01□□□□□ -0.33
USF1P22415 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.01□□□□□ -0.33
USF1P22415 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 DERL2-202ENST00000570848 657 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.01□□□□□ -0.33
USF1P22415 AC103810.3-201ENST00000583567 96 ntBASIC13.01□□□□□ -0.33
USF1P22415 AC097359.3-201ENST00000603982 1210 ntBASIC13.01□□□□□ -0.33
USF1P22415 AL606495.2-201ENST00000605867 535 ntBASIC13.01□□□□□ -0.33
USF1P22415 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.01□□□□□ -0.33
USF1P22415 AC099063.4-201ENST00000641099 1602 ntBASIC13.01□□□□□ -0.33
USF1P22415 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.01□□□□□ -0.33
USF1P22415 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
USF1P22415 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 AC011477.6-201ENST00000604980 1927 ntBASIC13□□□□□ -0.33
USF1P22415 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 MSTO2P-201ENST00000314835 1709 ntBASIC13□□□□□ -0.33
USF1P22415 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 AC245100.3-201ENST00000441281 285 ntBASIC13□□□□□ -0.33
USF1P22415 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC13□□□□□ -0.33
USF1P22415 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
USF1P22415 AC022137.2-201ENST00000503482 481 ntBASIC13□□□□□ -0.33
USF1P22415 AP001582.1-201ENST00000525856 295 ntBASIC13□□□□□ -0.33
USF1P22415 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
USF1P22415 KRT90P-201ENST00000549264 1064 ntBASIC13□□□□□ -0.33
USF1P22415 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 AC023310.1-201ENST00000554836 735 ntBASIC13□□□□□ -0.33
USF1P22415 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13□□□□□ -0.33
USF1P22415 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13□□□□□ -0.33
USF1P22415 PRAL-201ENST00000624952 3286 ntBASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 160.3 ms